I, too, would keep the top. The Ghia has a nice slope coming off of the back and I suspect that it would be more aero than a roadster, even with a tonneau. And as long as you're considering opinions, I'd fill the hole with steel. It doesn't weigh that much more, you'll regain a little bit of structural integrity, and you'll be welding and doing body work at about the level of a kitchen table, which makes it easy. If you're good, or know somebody who is, that patch could be done so smoothly that nobody would ever know - not even the wind.
One other thought with regards to the sunroof - do you really want to pre-heat your interior at Bonneville in August? Sun overhead at noon, being magnified into your interior as you wait in line to run? Shade is your friend.