Well, I am a tech inspector at Bonneville.... if at least ONE full thread is not visible beyond the nut, I ASK QUESTIONS.... If the thread is not at least flush with the outer edge of the nut, you WILL NOT pass tech.... unless, there is some serious mitigating factors, such as you custom made your own lug nuts and they are much longer than the ones you can purchase.... but then, i am an engineering technician and i understand strengths, stress loading etc....
However, I do not understand the concept that, every once in a while, people will show up at Bonneville who did not spend the 20 to 40 or so bucks that Summit or any of the other mail order companies charge for a full set of longer studs....
In matters like this, I ask that you use a bit of wisdom and think about safety and what the potential alternative could be if your stock length lug stud does not stay fully engaged with the nut....