Fa is a much easier concept for the non aero professional to understand and how affect its influence (make is smaller).
Fa does have an effect...maybe not as much as separated flow...but...ya know.
Or, you could conceptualize your design around the goal of lowering the
surface area to a minimum while avoiding separation. Surface area may be harder to calculate, but minimizing it is pretty straightforward even if you don't figure out exactly what it is.
The necked down fuselages in Costella's machines don't lower the frontal area, but they do drastically reduce the skin surface, as well as moving the center of pressure rearward.